Netie: Inferring the evolution of neoantigen-T cell interactions in tumors.
Tianshi Lu et al., Nat Methods, 2022
Sprod for De-noising Spatial Transcriptomics Data Based on Position and Image Information.
Yunguan Wang et al.,Nat Methods. , 2022
Deep learning-based prediction of the T cell receptor-antigen binding specificity.
Tianshi Lu et al.,Nature Machine Intelligence, 2021
Mapping the functional landscape of T cell receptor repertoires by single-T cell transcriptomics.
Ze Zhang et al., Nat Methods., 2021
Tumor neoantigenicity assessment with CSiN score incorporates clonality and immunogenicity to predict immunotherapy outcomes.
Tianshi Lu. et al., Sci Immunol., 2020